Subcellular Localization prediction tools
- YLoc (Kohlbacher et al 2010) : Prediction based on relevant features in protein. YLoc can achieve prediction accuracies of over 90%.
- MultiLoc2 (Kohlbacher O.et al 2009) :subcellular protein localization prediction server based on phylogeny and Gene Ontology . Find the server at http://www-bs.informatik.uni-tuebingen.de/Services/MultiLoc2
- SherLoc2(Shatkay et al 2009) : Hybrid prediction using sequence-based features as well as text-based features.
- ESLpred2 (Garg A, Raghava GP.2008): Improved version of ESLpred.
- Plant-Ploc (Chou KC 2008) : Predicts by hybridizing the 'higher level' approach with the ab initio approach.
- WoLF PSORT (Horton et al., 2007) : General Eukaryotic Localization Prediction (based on PSORTII, iPSORT)
- SUBA ( Miller et al 2007): Database of subcellular of arabidopsis proteins. Includes experimentally verified subcellular location information.
- subnuclear (Lei and Dai, 2005) : Predict subnuclear localizations
- pTARGET (Guda and Subramaniam, 2005) : Based on the occurrence patterns of protein functional domains and the amino acid compositional differences.
- pSLIP (Sarda et al., 2005) : SVM based using multiple physicochemical properties
- P2SL (Atalay and Cetin-Atalay, 2005) : Implicit motif distribution based hybrid computational kernel
- PSLpred (Bhasin et al., 2005) : A svm based method for prokaryotic proteins
- PPROWLER (Boden et al., 2005) : Detecting residues in targeting peptides
- CoupleLoc (Guo et al., 2005) : Combining residue-couple model and SVM
- LOCtree (Nair R. Rost B. 2005) :Prediction by mimicking the mechanism of cellular sorting
- SVMtm Predictor (Yuan et al., 2004) : SVM for Transmembrane Segments Prediction
- PrediSi (Hiller et al., 2004) : Prediction of signal peptides and their cleavage positions
- ESLpred (Bhasin and Raghava, 2004) : SVM for Eukaryotics using Dipeptide composition & PSI-BLAST
- LOCtarget (Nair and Rost, 2004) : Database for structrual genomics targets
- PA-Sub (Lu et al., 2004) : Proteome Analyst Specialized Subcellular Localication Server
- PSORT-B (Gardy et al., 2003) : An updated version of PSORT for Gram-negative bacteria
- BPROMPT (Taylor et al., 2003) : A consensus server for membrane protein prediction
- SubLoc (Hua et al., 2002) : SVM prediction system based on amino acid composition alone
- TMHMM (Krogh et al, 2001) : Prediction of transmembrane helics in proteins
- TargetP (Emanuelsson et al., 2000) : Prediction for eukaryotics based on N-terminal signal sequences
- PredictNLS (Cokol et al., 2000) : Tool for Nuclear Localization Signals Analysis
- NNPSL (Reinhardt et al., 1998) : Prediction of Subcellular Localization by Neural Networks
- ChloroP (Emanuelsson et al., 1999) : Predict the presence of chloroplast transit peptides
- HMMTOP (Tusnady et al., 1998) : Prediction of transmembrane helics and topology of proteins
- SignalP (Nielsen et al., 1997) : Predict the presence and location of signal peptides
- PSORT (Nakai et al., 1990s) : First computer program for subcellular location prediction